Dhruin
SasqWatch
GameTunnel is an excellent indie game site and their latest feature is a Top 100 list. It's based on games they have reviewed (a sizeable 458, apparently) so that is going to exclude some titles but it's still worth a browse. I doubt there will be much agreement with the rankings but RPGs (or RPG-ish games) covered include Mr. Robot, Geneforge 3 and 4, Cute Knight, Aveyond, DROD, Fastcrawl, Minions of Mirth and Land of Legends.
More information.
More information.